Hi Kay,
How do you plan to do the agent injection? Because indeed, AppDynamics auto-injection using the Java or .Net agent cannot do that.
However, there are plenty of ways to inject the JavaScript automatically:
* Using Apache injection : https://docs.appdynamics.com/display/PRO42/Injection+Using+Apache
* Using Nginx injection: https://docs.appdynamics.com/display/PRO42/Injection+Using+Nginx
* Using load-balancer injection, you need to talk to your team
Let me know what you think.
JB